Reports

Rule	ecocyc	goa_chicken	goa_chicken_complex	goa_human_isoform	goa_pig	goa_pig_isoform	goa_pig_rna	mgi	paint_ecocyc	paint_mgi	paint_pombase	paint_wb	paint_xenbase	pseudocap	wb
GAF lines are parsed according to GAF 2.2 specifications: gorule-0000001	0	0	0	0	0	0	0	0	0	0	0	0	0	1739	0
No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515': gorule-0000002	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC: gorule-0000006	23	0	0	5	0	0	0	1	0	0	0	0	0	0	0
IPI should not be used with GO:0003824 catalytic activity or descendents: gorule-0000007	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
No annotations should be made to uninformative high level terms: gorule-0000008	46	237	0	142	147	16	0	5704	79	1896	296	915	1570	70	2016
ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND: gorule-0000011	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
Taxon-appropriate annotation check: gorule-0000013	13	107	0	0	13	1	0	6	26	21	39	35	33	2	83
Dual species taxon check: gorule-0000015	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0
With/From: IC annotations require a With/From GO ID: gorule-0000016	36	0	0	4	0	0	0	2	0	0	0	0	0	0	0
IDA annotations must not have a With/From entry: gorule-0000017	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IPI annotations require a With/From entry: gorule-0000018	457	1	0	16	2	0	0	125	0	0	0	0	0	0	0
Automatic repair of annotations to merged or obsoleted terms: gorule-0000020	55	48	0	68	119	41	0	13	1	106	35	82	89	229	577
IBA annotations must have been sourced from the PAINT inference pipeline: gorule-0000026	5238	10000	0	41	10000	7968	0	0	0	0	0	0	0	0	10000
Each identifier in GAF is valid: gorule-0000027	154	0	0	5	0	0	0	0	0	0	0	0	0	0	0
GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect: gorule-0000028	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IEAs should be less than one year old.: gorule-0000029	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0
Obsolete GO_REFs are not allowed: gorule-0000030	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference: gorule-0000037	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants: gorule-0000039	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Qualifier: IKR evidence code requires a NOT qualifier: gorule-0000042	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Check for valid combination of evidence code and GO_REF: gorule-0000043	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.: gorule-0000046	401	314	0	161	735	137	0	1222	0	36	1	5	22	0	69
Annotations to ISS, ISA and ISO should not be self-referential: gorule-0000050	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
References should have only one ID per ID space: gorule-0000055	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Group specific filter rules should be applied to annotations: gorule-0000057	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Object extensions should conform to the extensions-patterns.yaml file in metadata: gorule-0000058	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GAF Version 2.0 and 2.1 are converted into GAF Version 2.2: gorule-0000059	0	0	0	0	0	0	0	0	0	0	0	0	0	3726	0
Allowed gene product to term relations (gp2term): gorule-0000061	955	29	3	42	20	0	0	7456	0	0	0	0	0	6	169
Other	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

GO Rule Violations by Group Dataset