Table of contents

Report

Group: pseudocap - Dataset: pseudocap

SUMMARY

This report generated on 2024-01-05

Header From Original Association File

!gaf-version: 2.0

Contents

gorule-0000001

gorule-0000002

gorule-0000006

gorule-0000007

gorule-0000008

gorule-0000011

gorule-0000013

gorule-0000015

gorule-0000016

gorule-0000017

gorule-0000018

gorule-0000020

gorule-0000026

gorule-0000028

gorule-0000029

gorule-0000030

gorule-0000037

gorule-0000039

gorule-0000042

gorule-0000043

gorule-0000046

gorule-0000050

gorule-0000055

gorule-0000057

gorule-0000058

gorule-0000059

gorule-0000061

other

MESSAGES

gorule-0000001

GAF lines are parsed according to GAF 2.2 specifications

Messages

gorule-0000002

No 'NOT' annotations to binding ; GO:0005488 or 'protein binding ; GO:0005515'

gorule-0000006

IEP and HEP usage is restricted to terms from the Biological Process ontology, except when assigned by GOC

gorule-0000007

IPI should not be used with GO:0003824 catalytic activity or descendents

gorule-0000008

No annotations should be made to uninformative high level terms

Messages

gorule-0000011

ND evidence code should be to root nodes only, and no terms other than root nodes can have the evidence code ND

gorule-0000013

Taxon-appropriate annotation check

Messages

gorule-0000015

Dual species taxon check

gorule-0000016

With/From: IC annotations require a With/From GO ID

gorule-0000017

IDA annotations must not have a With/From entry

gorule-0000018

IPI annotations require a With/From entry

gorule-0000020

Automatic repair of annotations to merged or obsoleted terms

Messages

gorule-0000026

IBA annotations must have been sourced from the PAINT inference pipeline

gorule-0000028

GO aspect should match the term's namespace; otherwise it is repaired to the appropriate aspect

gorule-0000029

IEAs should be less than one year old.

Messages

gorule-0000030

Obsolete GO_REFs are not allowed

gorule-0000037

IBA annotations should ONLY be assigned_by GO_Central and have GO_REF:0000033 as a reference

gorule-0000039

Protein complexes can not be annotated to GO:0032991 (protein-containing complex) or its descendants

gorule-0000042

Qualifier: IKR evidence code requires a NOT qualifier

gorule-0000043

Check for valid combination of evidence code and GO_REF

gorule-0000046

The ‘with’ field (GAF column 8) must be the same as the gene product (GAF column 2) when annotating to ‘self-binding’ terms.

gorule-0000050

Annotations to ISS, ISA and ISO should not be self-referential

gorule-0000055

References should have only one ID per ID space

gorule-0000057

Group specific filter rules should be applied to annotations

gorule-0000058

Object extensions should conform to the extensions-patterns.yaml file in metadata

gorule-0000059

GAF Version 2.0 and 2.1 are converted into GAF Version 2.2

Messages

gorule-0000061

Allowed gene product to term relations (gp2term)

Messages

other

Predictions

GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0035434 copper ion transmembrane transport AnnotationPropagation P GO:0005375 copper ion transmembrane transporter activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004130 cytochrome-c peroxidase activity IDA
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0071806 protein transmembrane transport AnnotationPropagation P GO:0008320 protein transmembrane transporter activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004536 DNA nuclease activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008855 exodeoxyribonuclease VII activity ISS
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0006412 translation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0006413 translational initiation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003743 translation initiation factor activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0006412 translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006414 translational elongation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0006417 regulation of translation AnnotationPropagation P GO:0003746 translation elongation factor activity ISS
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015098 molybdate ion transmembrane transporter activity ISS
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IGC
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IGC
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity IPI
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0009086 methionine biosynthetic process AnnotationPropagation P GO:0008705 methionine synthase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IMP
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:0051156 glucose 6-phosphate metabolic process AnnotationPropagation P GO:0004340 glucokinase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity IMP
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity IPI
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0015813 L-glutamate transmembrane transport AnnotationPropagation P GO:0005313 L-glutamate transmembrane transporter activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0008379 thioredoxin peroxidase activity IDA
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IDA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042626 ATPase-coupled transmembrane transporter activity ISS
GO:0000162 tryptophan biosynthetic process AnnotationPropagation P GO:0004834 tryptophan synthase activity ISS
GO:0015689 molybdate ion transport AnnotationPropagation P GO:0015412 ABC-type molybdate transporter activity ISS
GO:0098656 monoatomic anion transmembrane transport AnnotationPropagation P GO:0015412 ABC-type molybdate transporter activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0071805 potassium ion transmembrane transport AnnotationPropagation P GO:0015503 glutathione-regulated potassium exporter activity ISS
GO:0032508 DNA duplex unwinding AnnotationPropagation P GO:0003678 DNA helicase activity ISS
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0004530 deoxyribonuclease I activity ISS
GO:0006591 ornithine metabolic process AnnotationPropagation P GO:0004585 ornithine carbamoyltransferase activity IMP
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0004096 catalase activity IDA
GO:0098869 cellular oxidant detoxification AnnotationPropagation P GO:0016691 chloride peroxidase activity ISS
GO:0019344 cysteine biosynthetic process AnnotationPropagation P GO:0004124 cysteine synthase activity ISS
GO:2000142 regulation of DNA-templated transcription initiation AnnotationPropagation P GO:0016987 sigma factor activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity IDA
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0003887 DNA-directed DNA polymerase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0035725 sodium ion transmembrane transport AnnotationPropagation P GO:0015385 sodium:proton antiporter activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity IDA
GO:0055085 transmembrane transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity IDA
GO:0046835 carbohydrate phosphorylation AnnotationPropagation P GO:0004747 ribokinase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity ISO
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity ISO
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0042823 pyridoxal phosphate biosynthetic process AnnotationPropagation P GO:0004733 pyridoxamine phosphate oxidase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015288 porin activity IDA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0035351 heme transmembrane transport AnnotationPropagation P GO:0015439 ABC-type heme transporter activity ISS
GO:0006355 regulation of DNA-templated transcription AnnotationPropagation P GO:0003700 DNA-binding transcription factor activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000155 phosphorelay sensor kinase activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity IDA
GO:0031460 glycine betaine transport AnnotationPropagation P GO:0031459 ABC-type glycine betaine transporter activity IDA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0004129 cytochrome-c oxidase activity IMP
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IMP
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0046940 nucleoside monophosphate phosphorylation AnnotationPropagation P GO:0033862 UMP kinase activity ISS
GO:0071897 DNA biosynthetic process AnnotationPropagation P GO:0034061 DNA polymerase activity ISS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0015474 autotransporter activity IDA
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity NAS
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS
GO:0035672 oligopeptide transmembrane transport AnnotationPropagation P GO:0035673 oligopeptide transmembrane transporter activity IMP
GO:0006259 DNA metabolic process AnnotationPropagation P GO:0008311 double-stranded DNA 3'-5' DNA exonuclease activity ISS
GO:0045892 negative regulation of DNA-templated transcription AnnotationPropagation P GO:0016989 sigma factor antagonist activity ISS
GO:0000160 phosphorelay signal transduction system AnnotationPropagation P GO:0000156 phosphorelay response regulator activity ISS
GO:0055085 transmembrane transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:0042908 xenobiotic transport AnnotationPropagation P GO:0042910 xenobiotic transmembrane transporter activity IDA
GO:1902600 proton transmembrane transport AnnotationPropagation P GO:0046961 proton-transporting ATPase activity, rotational mechanism ISS

Predictions (experimental)